老年肌肉衰减综合征基因表达性别差异的生物信息学分析

doi:10.3969/j.issn.1006-9771.2018.03.001

《中国康复理论与实践》 ›› 2018, Vol. 24 ›› Issue (3): 249-255.doi: 10.3969/j.issn.1006-9771.2018.03.001

• 专题肌肉衰减综合征与肌萎缩 • 下一篇

老年肌肉衰减综合征基因表达性别差异的生物信息学分析

高原¹, 张伟波¹, 陈健², 寿崟¹, 徐平¹, 虎力¹

1.上海中医药大学针灸推拿学院,上海市 201203;
2.上海中医药大学中医复杂系统研究中心,上海市 201203

收稿日期:2017-11-14 修回日期:2017-12-29 出版日期:2018-03-25 发布日期:2018-03-27
通讯作者: 徐平。E-mail: xp99@163.com
作者简介:高原(1988-),男,汉族,甘肃兰州市人,博士研究生,主要研究方向：针灸调控延缓骨骼肌萎缩机制研究。通讯作者：徐平,女,教授,主要研究方向：针灸调控延缓骨骼肌萎缩机制研究。
基金资助:
1.国家自然科学基金面上项目(No. 81373755); 2.国家自然科学基金青年科学基金项目(No. 81403470)

Gender-related Gene Expression in Sarcopenia in Old People: A Bioinformatic Analysis

GAO Yuan¹, ZHANG Wei-bo¹, CHEN Jian², SHOU Yin¹, XU Ping¹, HU Li¹

1. Acupuncture-Moxibustion and Tuina College, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China;
2. Research Center for Traditional Chinese Medicine Complexity System, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China

Received:2017-11-14 Revised:2017-12-29 Published:2018-03-25 Online:2018-03-27
Contact: XU Ping. E-mail: xp99@163.com
Supported by:
Supported by National Natural Science Foundation of China (General) (No. 81373755) and National Natural Science Foundation of China (Youth) (No. 81403470)

摘要/Abstract

摘要： 目的利用生物信息学方法对男女肌肉衰减综合征患者与正常人群进行差异基因分析,研究肌肉衰减个体骨骼肌细胞基因表达在性别间的差异。方法从Gene Expression Omnibus数据库下载老年肌肉衰减综合征相关数据集,采用BRB-Array Tools及STRING软件在线分析,利用Cytoscape软件进行蛋白质相互作用网络分析。结果男性差异表达基因219个,其中高表达152个,低表达67个;女性差异表达基因142个,其中高表达90个,低表达52个;共同高表达47个,共同低表达21个。基因本体(GO)分析显示,女性肌肉衰减综合征患者差异基因涉及的GO类别较多,共同的富集模块为脂肪细胞的分化调节、蛋白激酶抑制剂活性、蛋白激酶调节剂活性等。抗肌萎缩蛋白、波形蛋白和原肌球蛋白α-3链是男性蛋白质相互作用网络中重要节点,而金属硫蛋白1H、动力蛋白轻链为女性的重要节点。结论老年肌肉衰减综合征发生机制存在性别差异。针对各自重要节点的后续研究可能对老年肌肉衰减综合征的发生机制及并发症的研究起重要作用。

关键词: 肌肉衰减综合征, 老年, 性别, 蛋白质相互作用网络, 生物信息学

Abstract: Objective To explore the gender differences in the genes expression of sarcopenia with bioinformatics. Methods The gene expression profiles downloaded from Gene Expression Omnibus database were analysed with BRB-Array Tools and STRING, then the protein-protein interaction network was built with Cytoscape. Results There were 152 genes up-regulated and 67 genes down-regulated in sarcopenic men, and 90 up-regulated and 52 down-regulated in women, with the same 47 up-regulated and 21 down-regulated. The gene ontology (GO) terms were found to be more complex in the sarcopenic women. The function analysis showed the same module genes were enriched in regulation of fat cell differentiation, protein kinase inhibitor activity and protein kinase regulator activity. In the protein-protein interaction networks, dystrophin, vimentin and tropomyosin α-3 were the most important in men, and metallothionein 1H and dynein light chain in women.Conclusion The nosogenesis of sarcopenia is different between genders from differentially expressed genes, that may be important for the future study.

Key words: sarcopenia, aged, gender, protein-protein interaction network, bioinformatics

中图分类号:

R685

高原, 张伟波, 陈健, 寿崟, 徐平, 虎力. 老年肌肉衰减综合征基因表达性别差异的生物信息学分析[J]. 《中国康复理论与实践》, 2018, 24(3): 249-255.

GAO Yuan, ZHANG Wei-bo, CHEN Jian, SHOU Yin, XU Ping, HU Li. Gender-related Gene Expression in Sarcopenia in Old People: A Bioinformatic Analysis[J]. 《Chinese Journal of Rehabilitation Theory and Practice》, 2018, 24(3): 249-255.

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老年肌肉衰减综合征基因表达性别差异的生物信息学分析

Gender-related Gene Expression in Sarcopenia in Old People: A Bioinformatic Analysis

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